Tools
Bioinformatics tools and scientific analysis categories.
A
- AbLang/app/ablang
- AbLang-2/app/ablang-2
- ABodyBuilder3/app/abodybuilder3
- ADMET-AI/app/admet-ai
- Admetica/app/admetica
- AF-Cluster/app/af-cluster
- AF2BIND/app/af2bind
- AF2Dock/app/af2dock
- Aggrescan3D/app/aggrescan3d
- AIMNet2/app/aimnet2
- Alignment tools/app/alignment
- Aliphatic Index/app/aliphatic-index
- AllMetal3D/app/allmetal3d
- AlphaFlow/app/alphaflow
- AlphaFold Database Download/app/alphafold-database-download
- AlphaFold2/app/alphafold-2
- AlphaGenome/app/alphagenome
- Amino acid composition/app/amino-acid-composition
- Analysis tools/app/analysis
- ANARCI/app/anarci
- AntiFold/app/antifold
- AutoDock Vina/app/autodock-vina
- AutoDock-GPU/app/autodock-gpu
B
C
D
- DeepEMhancer/app/deepemhancer
- DeepImmuno/app/deepimmuno
- Design tools/app/design
- DFMDock/app/dfmdock
- DiffAb/app/diffab
- DiffDock-L/app/diff-dock
- DLKcat/app/dlkcat
- DNA mutator/app/dna-mutator
- DNA Shuffle/app/dna-shuffle
- DNA to Protein Converter/app/dna-to-protein
- DNA to RNA converter/app/dna-to-rna
- DNAGenIQ - Random DNA sequence generator/app/random-dna
- Docking tools/app/docking
- DockQ/app/dockq
- DR-BERT/app/dr-bert
- DSSP/app/dssp
- DynamicBind/app/dynamic-bind
E
F
- FASTA splitter/app/fasta-splitter
- FASTA to FASTQ Converter/app/fasta-to-fastq
- FASTQ to FASTA converter/app/fastq-to-fasta
- FastTree/app/fasttree
- Filter DNA/app/filter-dna
- Filter protein/app/filter-protein
- FindPept/app/find-pept
- FlowDock/app/flowdock
- Folding tools/app/folding
- FoldSeek/app/foldseek
- fpocket/app/fpocket
G
- GC content calculator/app/gc-content
- GenBank Feature Extractor/app/genbank-feature-extractor
- GenBank to FASTA Converter/app/genbank-to-fasta
- Genie 3/app/genie-3
- GenMol/app/genmol
- GeoDock/app/geodock
- Glycosylation site finder/app/glycosylation-sites
- gmx_MMPBSA/app/gmx-mmpbsa
- GNINA/app/gnina
- GRAVY/app/gravy
- GROMACS/app/gromacs
H
I
- IgBLAST/app/igblast
- IgDesign/app/igdesign
- IgGM/app/iggm
- ImmuneBuilder/app/immunebuilder
- InChI to SMILES/app/inchi-to-smiles
- Instability Index/app/instability-index
- IntelliFold 2/app/intellifold-2
- InterPro Download/app/interpro-download
- IPC 2.0 (isoelectric point calculator)/app/isoelectric-point-calculator
- IPSAE/app/ipsae
- IQ-TREE/app/iq-tree
L
M
- MAFFT/app/mafft
- mBER/app/mber
- MD Trajectory Analysis/app/md-trajectory-analysis
- MDGen/app/mdgen
- MiniFold/app/minifold
- MMseqs2/app/mmseqs2
- MOL to SMILES/app/mol-to-smiles
- MOL2 to SMILES/app/mol2-to-smiles
- Molecular descriptors/app/molecular-descriptors
- MolProbity/app/molprobity
- MUMmer4/app/mummer4
- MUSCLE5/app/muscle5
N
O
P
- PAINS filter/app/pains-filter
- PandaDock/app/pandadock
- ParaSurf/app/parasurf
- PDB Download/app/pdb-download
- PDB to CIF Converter/app/pdb-to-cif
- PDB to FASTA converter/app/pdb-to-fasta
- PDB to MOL2 Converter/app/pdb-to-mol2
- PDB to SDF Converter/app/pdb-to-sdf
- PDB2PQR/app/pdb2pqr
- PDBe Download/app/pdbe-download
- PDBFixer/app/pdb-fixer
- PDBsum/app/pdbsum
- PepMimic/app/pep-mimic
- PepMLM/app/pepmlm
- Peptide cutter/app/peptide-cutter
- Peptide mass calculator/app/peptide-mass
- PeptideBuilder/app/peptidebuilder
- pI Calculator/app/pi-calculator
- PocketFlow/app/pocketflow
- PocketXMol/app/pocketxmol
- PoseBusters/app/posebusters
- PPAP/app/ppap
- Primer3/app/primer3
- ProFam/app/profam
- ProGen2/app/progen
- PROPKA 3/app/propka
- ProstT5/app/prostt5
- Protein charge plot/app/charge-plot
- Protein molecular weight calculator/app/molecular-weight
- Protein motif scanner/app/motif-scanner
- Protein parameters/app/protein-parameters
- Protein scale profiler/app/protein-scale
- Protein stability/app/protein-stability
- Protein to DNA converter/app/protein-to-dna
- Protein-Sol/app/protein-sol
- Proteina-Complexa/app/proteina-complexa
- ProteinMPNN/app/protein-mpnn
- Protenix v2/app/protenix
- Proteo-R1/app/proteo-r1
- ProtGenIQ - Random protein sequence generator/app/random-protein
- PubChem Download/app/pubchem-download
- pySCA/app/pysca
Q
R
- Radius of gyration/app/radius-of-gyration
- Ramachandran plot/app/ramachandran-plot
- RAxML-NG/app/raxml-ng
- Reverse complement generator/app/reverse-complement
- RFantibody/app/rfantibody
- RFdiffusion/app/rfdiffusion
- RFdiffusion 2/app/rfdiffusion-2
- RFdiffusion3/app/rfdiffusion3
- Rhea Download/app/rhea-download
- RMSD calculator/app/rmsd-calculator
- RNA to DNA converter/app/rna-to-dna
- RNAalifold/app/rnaalifold
- RNAcofold/app/rnacofold
- RNAdistance/app/rnadistance
- RNAdos/app/rnados
- RNAduplex/app/rnaduplex
- RNAeval/app/rnaeval
- RNAfold/app/rnafold
- RNAGenIQ - Random RNA sequence generator/app/random-rna
- RNAinverse/app/rnainverse
- RNALfold/app/rnalfold
- RNAplex/app/rnaplex
- RNAplfold/app/rnaplfold
- RNAplot/app/rnaplot
- RNAsubopt/app/rnasubopt
- RNAup/app/rnaup
- RosettaFold3/app/rosettafold3
S
- Salmon/app/salmon
- SASA calculator/app/sasa-calculator
- ScanNet/app/scannet
- Screening tools/app/screening
- SDF to PDB Converter/app/sdf-to-pdb
- SDF to SMILES/app/sdf-to-smiles
- SigmaDock/app/sigmadock
- Simulation tools/app/simulation
- SMILES to InChI/app/smiles-to-inchi
- SMILES to MOL2/app/smiles-to-mol2
- SMILES to PDB/app/smiles-to-pdb
- SMILES to SDF/app/smiles-to-sdf
- SMINA/app/smina
- SMRTnet/app/smrtnet
- SolubleMPNN/app/soluble-mpnn
- SPRINT/app/sprint
- SuperWater/app/superwater
- SurfDock/app/surfdock