ProteinIQ
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ProteinIQ docs

Start analyzing with ProteinIQ

Everything you need to run bioinformatics tools, organize results, and automate analyses. From your first job to shared results.

Start guideBrowse toolsAPI reference
curl -X POST "https://proteiniq.io/api/v1/jobs" \
  -H "Authorization: Bearer $PROTEINIQ_API_KEY" \
  -H "Content-Type: application/json" \
  -H "Idempotency-Key: $PROTEINIQ_RUN_KEY" \
  -d '{
    "tool": "esmfold",
    "name": "ESMfold API example",
    "input": {
      "inputs": [{
        "id": "seqs_1",
        "slotId": "protein",
        "kind": "protein",
        "format": "fasta",
        "content": ">example\nACDEFGHIKLMNPQRSTVWY",
        "source": { "type": "text" }
      }]
    }
  }'

Platform

Choose how you work

Run analyses in the browser, or automate the same tools from your own code.

Web app

Run tools from your browser with guided inputs, interactive viewers, and results you can save and share.

  • Start guide
  • Concepts
  • Preparing inputs

API

Submit jobs, follow their progress, and download results from your own scripts, notebooks, and pipelines.

  • Quickstart
  • Authentication
  • API reference

Connect ProteinIQ to other tools:

MCP serverOpenAPI specJob events

Using ProteinIQ

From first job to shared results

Follow the path or jump to what you need.

  1. 1

    Get started

    Start guideConceptsPreparing inputsRepair and validate a structure
  2. 2

    Analyze

    AI AssistantDatabase searchViewersBatchesWorkflows
  3. 3

    Organize and share

    ProjectsJobsFiles and collectionsSharing and permissions
  4. 4

    Manage your workspace

    Workspaces and seatsCreditsJob credit usageWorkflow credit usagePricing and billingBilling and invoicesCancellation and renewalsAccount deletion

Resources

Keep learning

Go deeper into the science, the tools, and what changed recently.

Tool guidesLearn the science behind each analysis.Bioinformatics toolsBrowse every tool you can run.Use casesSee tools combined for real research tasks.What’s newLatest features and updates.TroubleshootingInvestigate errors and missing results.Contact supportGet help with your next step.
Get started
WelcomeStart guideConceptsPreparing inputsRepair and validate a structureExamples
Work and files
ProjectsJobsFiles and collectionsWorkflowsTroubleshooting analyses
Batches
OverviewCreating a batchCSV batchesPairing and combinationsBatch examplesCSV reference
Research tools
AI AssistantDatabase searchViewers
Plans and credits
CreditsJob credit usageWorkflow credit usagePricing and billingBilling and invoices
Workspace and account
Workspaces and seatsSharing and permissionsCancellation and renewalsAccount deletion
Appearance
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