01 / tools
Run 230+ tools in your browser.
Fold, design, dock, simulate, and analyze biomolecules in your browser. Bring your sequences and structures, choose your settings, and explore results without local installs.
Bioinformatics tools and workflows in your browser
Design, fold, dock, simulate, and analyze biomolecules without having to download anything or rent GPUs.
Already used by 11,700 researchers
Explore by category
The tools for your next discovery.
From predicting protein structures to screening compounds, find the tools for each step of your research. Run your analyses in one workspace, without writing code.
Folding
Predict 3D protein structures from sequences
Design
Design and engineer new proteins, antibodies, and molecules
Docking
Predict how molecules bind to proteins
Simulation
Run molecular dynamics and simulations
Alignment
Align, search, and compare sequences and structures
Screening
Filter compounds and predict properties
Analysis
Calculate properties, validate structures, and generate embeddings
Utilities
Convert formats, clean files, and generate sequences
Research happens here
11,700
Researchers. One shared drive to discover.
From a single sequence to an entire study, explore what comes next.
- Jobs submitted
- 25,000
- Tools available
- 243
- Institutions worldwide
- 40+
Your research workspace
One workspace. Every step of your research.
Run tools, connect workflows, and scale analyses with batch mode or the API. Keep your inputs and results together, with an assistant to help you decide what comes next.
02 / workflows
Connect tools into workflows.
Pass results between compatible tools without moving files by hand. Configure each step, see the total cost, and follow your analysis from input to output.
03 / batch
Run your analyses in batches.
Apply a tool across multiple inputs in one batch. Follow each job’s progress and keep the results together, without setting up every run individually.
Batch modeExample batchsequence_01.fastaCompletedsequence_02.fastaCompletedsequence_03.fastaRunningsequence_04.fastaQueued04 / api
Submit runs through one API.
Connect your scripts and research pipelines to ProteinIQ. Discover tools, estimate costs, submit jobs, and retrieve results through one API.
ProteinIQ API/api/v1GET/toolsDiscover available tools
POST/jobsSubmit an analysis
GET/jobs/{id}/statusFollow job progress
GET/results/{id}Retrieve your results
05 / assistant
Let the AI assistant help.
Interpret results, troubleshoot runs, and plan your next analysis with the assistant. Prepare follow-up jobs in the same workspace, with your approval before submission.
Latest customer stories
View all customer stories
Published Research
How PepGate narrowed 30 peptides to one lead
ProteinIQ stability screening helped researchers compare AI-designed ACE inhibitors before biochemical and animal testing.
Journal of Medicinal Chemistry Zhejiang University
Antimicrobial Peptides
Insect antimicrobial peptide structures predicted with Chou-Fasman
Researchers used ProteinIQ's Chou-Fasman tool to predict secondary structures for five insect-derived antimicrobial peptide candidates before experimental testing.
Antibiotics Jiangsu Academy of Agricultural Sciences
Structure Prediction
Coa6-CoQ10 binding site modeled with Protenix
Researchers used Protenix to model how CoQ10 binds Coa6 in a mouse study of mitochondrial memory impairment.
Translational Neurodegeneration The Fourth Military Medical University
From the research community
What people are saying about ProteinIQ.
Public posts about the tools, workflows, and research made with ProteinIQ.
inThe docking interface is easy and trustworthy.
A study screening insect-derived antimicrobial peptides used ProteinIQ’s Chou–Fasman tool to predict peptide secondary structure.
ParaSurf is live on proteinIQ.io!
inHaving separate tools integrated into one single dashboard made it incredibly straightforward to manage the entire workflow
Researchers used ProteinIQ’s Protenix server to predict a Coa6–CoQ10 complex in a study of neuronal mitochondrial dysfunction and working memory.
I performed reverse translation with the help of ProteinIQ
An overview of diffusion models in drug discovery features ProteinIQ and its browser-based workflow for running molecular design tools.
Researchers used ProteinIQ to calculate physicochemical properties of plant-derived peptides, including theoretical pI, instability index, aliphatic index, and GRAVY.
A study of PET-hydrolysing enzymes cites ProteinIQ’s SASA calculator in its supporting information for comparing active-site accessibility.
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