Bioinformatics in your browser
Fold, design, dock, and simulate without writing code.
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Browse all tools →11,700+ researchers. Published in
Built for scientific use cases
270+ published methods, running on GPUs with no setup. Every example is a real run you can open.
Folding
Predict protein structures and complexes with ligands, nucleic acids, and other proteins, with per-residue confidence for every model.
- Boltz-2, Chai-1, and ESMFold
- pLDDT, PAE, and ipTM for every model
- Binding affinity for protein-ligand complexes
Docking
Place small molecules in a binding site and rank the poses, from classical scoring to AI docking and protein-protein docking.
- AutoDock Vina, Smina, and DiffDock-PP
- Dock many ligands against one target
- Validate poses with PoseBusters
Protein design
Design binders, antibodies, and new sequences for a target, then check each design with structure prediction.
- BindCraft, RFdiffusion, and mBER
- Binders, VHHs, and de novo backbones
- ipTM and pLDDT on every design
Alignment
Align sequences and structures, search databases for homologs, and build phylogenetic trees.
- Clustal Omega and US-align
- Homolog search with MMseqs2 and Foldseek
- Phylogenetic trees with IQ-TREE
Validation
Check structures and poses for geometry problems, clashes, and outliers before you rely on them.
- MolProbity for experimental and predicted structures
- PoseBusters for docked and co-folded poses
One workspace from first
run to full pipeline
Chain tools, run them at scale, script them, and keep every file and result organized.
Workflows
Chain preparation, docking, and validation. Results pass between steps, and you see the total cost before anything runs.
Batches
Run one tool across hundreds of sequences or molecules and keep the results together.
API and Python SDK
Discover tools, estimate costs, submit jobs, and fetch results from notebooks, pipelines, or AI agents over MCP.
AI assistant
Interpret results, troubleshoot runs, and draft methods sections. Follow-up jobs wait for your approval.
Files and collections
Uploads and outputs land in one library. Send any file to the next tool or group sets for your team.
Projects
Keep related results, files, and workflows together so a study stays in one place.
Used in published research
Peer-reviewed studies that ran their analysis on ProteinIQ.
Comparative Genomics Reveals Conserved Bacteriocin-Associated Loci in Lacticaseibacillus paracasei Strains with Anti-MRSA Activity Isolated from Palmyra Palm Sugar
“Having separate tools integrated into one single dashboard made it incredibly straightforward to manage the entire workflow.”
Structure-Guided Extremophile Genome Mining Expands the PETase Landscape and Reveals PET-Hydrolysing True Lipase Lineages
Barcelona Supercomputing Center and ICP-CSICPepGate: A Dual-Path Diffusion Framework for ACE Inhibitory Peptide De Novo Design
Zhejiang University“The docking interface is easy and trustworthy.”
Phospholipid-Coated Fe3O4 Nanoparticles Enable Rapid Screening of Putative Antimicrobial Peptides from Clanis bilineata tsingtauica Hemolymph
Jiangsu Academy of Agricultural SciencesThe presence and impact of G-quadruplexes in plant chloroplast DNA
Institute of Biophysics of the Czech Academy of SciencesThe Drp1-CoQ10-Coa6-ETC axis represents a therapeutic potential for working memory impairment caused by neuronal mitochondrial dysfunction
The Fourth Military Medical UniversityAlso mentioned by BiopharmaTrend, ParaSurf on GitHub, and HTGAA. Share your experience.
What’s new
Recent tools and upgrades.
- ANARCI now renumbers antibody and TCR structures, and MD trajectory analysis results read as one report with publication-ready figures
- Eight new chemistry and sequence tools arrive, along with NuCaliby for designing coding DNA from protein backbones and task-based tool search
- SMINA adds flexible side-chain docking, and many hosted tools now expose more of their native settings and outputs
- Eight new Boltz models and screening tools arrive, alongside DeepRank-Ab, DiffDock-PP and OpenDDE
Frequently asked questions
Something else on your mind? Get in touch.
ProteinIQ is a browser workspace for running 270+ bioinformatics tools, including structure prediction, protein design, molecular docking, molecular dynamics, and sequence analysis. Your files, jobs, and results live in one place, and tools can be chained into workflows or run in batches.
No. Lightweight tools run directly in your browser, and heavier models run on cloud GPUs that we manage. You only need a web browser.
The Free plan includes 200 credits and up to 3 jobs per day, and tools that run in your browser cost 0 credits. Paid plans add monthly credits, batches, and higher limits.
See pricing for plan details.
Yes. Your sequences, structures, and results are never used for AI training or shared with third parties. Jobs run in isolated containers, and data is encrypted in transit and at rest.
Read more on our security page.
Commercial use requires a Pro or Enterprise plan. For team procurement, security reviews, or custom compute, talk to sales.
Credits for jobs that end in Failed or Timeout are refunded automatically.
Yes. The ProteinIQ API lets you discover tools, estimate costs, submit jobs, and retrieve results from scripts, notebooks, and pipelines.
Run your first analysis today
Start with 200 free credits and no installs. Upgrade when your project needs more compute.