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Examples

Practical Python and MCP examples for protein analysis.

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3 examples

Compare two protein structures

Align a mobile structure to a reference with USAlign and retain both normalized TM-scores and alignment files.

Inspect an analysis with MCP

Ask an agent to inspect an existing job, read its reports, and explain the evidence without starting new compute.

Validate a protein structure

Run MolProbity from Python, review geometry, and save its native reports with checksums.

TitleCategoryInterfaceUpdated

  • Compare two protein structures

    Align a mobile structure to a reference with USAlign and retain both normalized TM-scores and alignment files.

    StructuresPython SDK2026-10-05

  • Inspect an analysis with MCP

    Ask an agent to inspect an existing job, read its reports, and explain the evidence without starting new compute.

    AgentsMCP2026-10-05

  • Validate a protein structure

    Run MolProbity from Python, review geometry, and save its native reports with checksums.

    StructuresPython SDK2026-10-05
Python SDK setupAPI referenceConnect an MCP client

Each example states how it was checked. Offline software tests and historical previews are identified separately from fresh scientific runs. Python examples quote before submitting compute.

Examples
Overview
Structures
Compare two protein structuresValidate a protein structure
Agents
Inspect an analysis with MCP
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