RNAplot

Visualize RNA secondary structures from dot-bracket inputs.

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Configure input settings on the left, then click "Submit"

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What RNAplot Does

RNAplot renders a supplied RNA secondary structure. ProteinIQ wraps the upstream ViennaRNA RNAplot CLI by accepting a sequence plus matching dot-bracket structure and returning the selected plot format as a downloadable file.

Inputs

  • Provide one RNA sequence in FASTA or plain-sequence format.
  • Provide one matching dot-bracket structure.
  • RNAplot does not fold the sequence for you.

Settings

  • Output format: upstream RNAplot output format. Supported values are eps, svg, gml, xrna, and ssv.

Output

The results table reports:

  • sequence identifier
  • submitted sequence
  • sequence length
  • submitted structure
  • selected output format

The Files tab contains the generated upstream plot artifact for the chosen format.