Related tools
CpG Island Finder
Identify CpG islands in DNA sequences using the Gardiner-Garden and Frommer criteria. Analyze GC content, CpG density, and observed/expected ratios.
GC content calculator
Calculate GC content and nucleotide composition of DNA/RNA sequences. Analyze individual sequences or get combined statistics.
ORF Finder
Find all Open Reading Frames (ORFs) in DNA sequences. Searches all six reading frames and supports multiple genetic codes.
AbLang
Restore missing residues in antibody sequences using a language model trained on the Observed Antibody Space (OAS) database. Achieves better restoration than IMGT germlines or ESM-1b while being 7x faster.
DockQ
Assess docking model quality by comparing predicted complexes against native references. DockQ v2.1.3 supports protein, nucleic-acid, and supported small-molecule interfaces with faithful upstream metrics.
IPC 2.0 (isoelectric point calculator)
Isoelectric Point Calculator 2.0 - Predict protein/peptide isoelectric point (pI) using 18+ validated pKa scales, SVR models, and deep learning. Supports proteins, peptides, and comprehensive analysis.
AllMetal3D
Predict metal and water binding sites in protein structures using 3D convolutional neural networks (AllMetal3D + Water3D).
ScanNet
Geometric deep learning model for predicting protein binding sites directly from 3D structure. Identifies where proteins interact with other proteins, antibodies, or disordered proteins with high accuracy, including for novel protein folds.
SuperWater
Predict protein hydration sites from a structure using a diffusion model with ESM features and a confidence-filtering head.
ThermoMPNN
Predict protein thermostability changes (ΔΔG) for point mutations using a graph neural network. Enables computational saturation mutagenesis screening to identify stabilizing mutations.