Protein engineering workflows

Design and validate proteins with connected evidence

Move from sequence or structure to folding, stability, variant scoring, binder design, and downstream validation without losing the files, tables, and confidence signals behind each result.

proteiniq.io/app/workflows/templates?template=protein-design-stability-screen

Built for protein engineering

Protein engineering projects move through structure prediction, design, mutation scoring, stability checks, binder design, and validation. ProteinIQ keeps the evidence for each candidate visible and exportable.

Faithful upstream wrappers

ProteinIQ preserves upstream behavior, defaults, output names, files, scores, and logs instead of hiding scientific tools behind custom local logic.

Evidence stays connected

Sequences, structures, tables, scores, and downloadable outputs remain tied to the workflow step and candidate they support.

Built for review

The workflow is organized around inspectable computational evidence for prioritization before experimental follow-up.

Sequences, structures, mutations, model confidence, and stability outputs are often produced by different tools.

Protein design decisions need upstream scores and files, not just a final ranked sequence.

Variant review is more reliable when folding, stability, solubility, and validation outputs remain tied to each candidate.

Design, fold, score, and validate variants

Move from protein sequence or structure to designed candidates, predicted structures, stability evidence, and exportable review files.

Design protein variants

Generate sequence candidates from structural context and keep each design tied to its upstream outputs.

Open ProteinMPNN

Predict structures

Fold candidate sequences and compare confidence signals before stability or docking follow-up.

Open ESMFold

Score variants

Review stability and solubility evidence so candidate rankings carry the outputs behind each decision.

Open ThermoMPNN

Questions & answers

Start protein engineering in ProteinIQ

MonthlyAnnual (save 20%)

Free

$0

Includes:

  • 100 credits
  • 3 jobs per day
  • 1 concurrent job
  • 1 workflow
  • 1 seat
  • Core tool features
  • Academic license

Lite

$9$7/month

Everything Free, plus:

  • 500 credits / month
  • No daily job limit
  • 2 concurrent jobs
  • 3 workflows
  • Advanced tool settings
  • AI assistant, SVG export, batch runs, and workflows

Plus

$29$23/month

Everything Lite, plus:

  • 2,000 credits / month
  • 5 concurrent jobs
  • 5 workflows

Pro

Best value
$99$79/month

Everything Plus, plus:

  • 8,000 credits / month
  • 10 concurrent jobs
  • 20 workflows
  • Commercial license

Enterprise

Custom

Everything Pro, plus:

  • Custom credit allocation
  • Shared workspace seats and credits
  • Invoice billing, purchase orders, and vendor setup
  • Unlimited workflows
  • Custom workflows, integrations, and security review