01 — Challenges

Challenges we solve

Common obstacles researchers face and how ProteinIQ addresses them.

Design sequences for protein backbone structures
Generate novel protein and peptide binders against any target
Create de novo protein structures with atomic precision
Optimize binding sites with ligand and metal context

02 — Workflow

How it works

A streamlined workflow from input to results.

1

Upload Structure

Provide target backbone or binding target PDB

2

Configure Design

Set residue constraints, chain specifications

3

Generate Sequences

ProteinMPNN or LigandMPNN designs optimized sequences

4

Validate & Order

Check predictions and export for synthesis

03 — Comparison

Traditional methods vs. ProteinIQ

See how we compare to traditional computational approaches.

AspectTraditionalProteinIQ
Design approachMonths of directed evolutionAI-guided design in minutes
Success rateLow hit rate from random mutagenesisHigh sequence recovery (>50%)
Binder designPhage display campaigns ($100K+)Generative AI binder design
Iteration speedWeeks per design cycleGenerate hundreds of variants instantly

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