Peptide discovery workflows

Discover peptides worth testing sooner

Design, screen, and characterize peptide candidates across sequence properties, activity signals, structure predictions, and developability checks before experimental follow-up.

proteiniq.io/app/workflows/templates?template=target-conditioned-peptide-binder-design

Built for peptide discovery

Peptide programs often jump between sequence design, cleavage checks, physicochemical properties, activity signals, structure prediction, and solubility review. ProteinIQ keeps those outputs close enough to compare before lab follow-up.

Faithful upstream wrappers

ProteinIQ preserves upstream behavior, defaults, output names, files, scores, and logs instead of hiding scientific tools behind custom local logic.

Evidence stays connected

Sequences, structures, tables, scores, and downloadable outputs remain tied to the workflow step and candidate they support.

Built for review

The workflow is organized around inspectable computational evidence for prioritization before experimental follow-up.

Candidate peptides need mass, composition, cleavage, solubility, and activity signals before downstream modeling.

Sequence-derived tables and predicted structures are easy to separate from the candidate they describe.

Shortlists are more useful when the sequence, score table, structure file, and exported evidence move together.

Design, characterize, and shortlist peptides

Move from peptide sequences to property tables, activity predictions, structure files, and exportable candidate evidence.

Generate peptide candidates

Use sequence design outputs as a starting point, then carry candidate FASTA records into downstream checks.

Open PepMLM

Calculate peptide properties

Compare mass, cleavage, and sequence-level descriptors before spending time on deeper models.

Calculate peptide mass

Review activity signals

Screen antimicrobial, anticancer, solubility, and stability-related signals as prioritization evidence.

Open peptide screens

Questions & answers

Start peptide discovery in ProteinIQ

MonthlyAnnual (save 20%)

Free

$0

Includes:

  • 100 credits
  • 3 jobs per day
  • 1 concurrent job
  • 1 workflow
  • 1 seat
  • Core tool features
  • Academic license

Lite

$9$7/month

Everything Free, plus:

  • 500 credits / month
  • No daily job limit
  • 2 concurrent jobs
  • 3 workflows
  • Advanced tool settings
  • AI assistant, SVG export, batch runs, and workflows

Plus

$29$23/month

Everything Lite, plus:

  • 2,000 credits / month
  • 5 concurrent jobs
  • 5 workflows

Pro

Best value
$99$79/month

Everything Plus, plus:

  • 8,000 credits / month
  • 10 concurrent jobs
  • 20 workflows
  • Commercial license

Enterprise

Custom

Everything Pro, plus:

  • Custom credit allocation
  • Shared workspace seats and credits
  • Invoice billing, purchase orders, and vendor setup
  • Unlimited workflows
  • Custom workflows, integrations, and security review