# Tools

Bioinformatics tools and scientific calculators.

## A

- [AbLang](https://proteiniq.io/app/ablang)/app/ablang
- [AbLang-2](https://proteiniq.io/app/ablang-2)/app/ablang-2
- [ABodyBuilder3](https://proteiniq.io/app/abodybuilder3)/app/abodybuilder3
- [ADMET-AI](https://proteiniq.io/app/admet-ai)/app/admet-ai
- [Admetica](https://proteiniq.io/app/admetica)/app/admetica
- [AF-Cluster](https://proteiniq.io/app/af-cluster)/app/af-cluster
- [AF2BIND](https://proteiniq.io/app/af2bind)/app/af2bind
- [AF2Dock](https://proteiniq.io/app/af2dock)/app/af2dock
- [Aggrescan3D](https://proteiniq.io/app/aggrescan3d)/app/aggrescan3d
- [AIMNet2](https://proteiniq.io/app/aimnet2)/app/aimnet2
- [Aliphatic Index](https://proteiniq.io/app/aliphatic-index)/app/aliphatic-index
- [AllMetal3D](https://proteiniq.io/app/allmetal3d)/app/allmetal3d
- [AlphaFlow](https://proteiniq.io/app/alphaflow)/app/alphaflow
- [AlphaFold Database Download](https://proteiniq.io/app/alphafold-database-download)/app/alphafold-database-download
- [AlphaFold2](https://proteiniq.io/app/alphafold-2)/app/alphafold-2
- [AlphaGenome](https://proteiniq.io/app/alphagenome)/app/alphagenome
- [Amino acid composition](https://proteiniq.io/app/amino-acid-composition)/app/amino-acid-composition
- [ANARCI](https://proteiniq.io/app/anarci)/app/anarci
- [ANARCII](https://proteiniq.io/app/anarcii)/app/anarcii
- [AntiFold](https://proteiniq.io/app/antifold)/app/antifold
- [AutoDock Vina](https://proteiniq.io/app/autodock-vina)/app/autodock-vina
- [AutoDock-GPU](https://proteiniq.io/app/autodock-gpu)/app/autodock-gpu

## B

- [BindCraft](https://proteiniq.io/app/bindcraft)/app/bindcraft
- [BioEmu](https://proteiniq.io/app/bioemu)/app/bioemu
- [BioEmu2](https://proteiniq.io/app/bioemu-2)/app/bioemu-2
- [Bioinformatics tools](https://proteiniq.io/app/tools)/app/tools
- [BioPhi](https://proteiniq.io/app/biophi)/app/biophi
- [BLAST Search](https://proteiniq.io/app/blast-search)/app/blast-search
- [Boltz ADME](https://proteiniq.io/app/boltz-adme)/app/boltz-adme
- [Boltz Protein Screen](https://proteiniq.io/app/boltz-protein-screen)/app/boltz-protein-screen
- [Boltz Sequence Redesign](https://proteiniq.io/app/boltz-sequence-redesign)/app/boltz-sequence-redesign
- [Boltz Small Molecule Explore](https://proteiniq.io/app/boltz-small-molecule-explore)/app/boltz-small-molecule-explore
- [Boltz Small Molecule Screen](https://proteiniq.io/app/boltz-small-molecule-screen)/app/boltz-small-molecule-screen
- [Boltz-2](https://proteiniq.io/app/boltz-2)/app/boltz-2
- [Boltz-2.1](https://proteiniq.io/app/boltz-2-1)/app/boltz-2-1
- [BoltzGen](https://proteiniq.io/app/boltzgen)/app/boltzgen
- [BoltzMol-1](https://proteiniq.io/app/boltzmol-1)/app/boltzmol-1
- [BoltzProt-1](https://proteiniq.io/app/boltzprot-1)/app/boltzprot-1
- [Brenk filter](https://proteiniq.io/app/brenk-filter)/app/brenk-filter
- [Butina clustering](https://proteiniq.io/app/butina-clustering)/app/butina-clustering

## C

- [Caliby](https://proteiniq.io/app/caliby)/app/caliby
- [CANYA](https://proteiniq.io/app/canya)/app/canya
- [Carbon](https://proteiniq.io/app/carbon)/app/carbon
- [CatPred](https://proteiniq.io/app/catpred)/app/catpred
- [Chai-1](https://proteiniq.io/app/chai-1)/app/chai-1
- [ChEMBL Download](https://proteiniq.io/app/chembl-download)/app/chembl-download
- [Chemical substructure search](https://proteiniq.io/app/chemical-substructure-search)/app/chemical-substructure-search
- [Chou-Fasman](https://proteiniq.io/app/chou-fasman)/app/chou-fasman
- [CleaveNet](https://proteiniq.io/app/cleavenet)/app/cleavenet
- [Clustal Omega](https://proteiniq.io/app/clustal-omega)/app/clustal-omega
- [Codon optimization](https://proteiniq.io/app/codon-optimization)/app/codon-optimization
- [ColabDock](https://proteiniq.io/app/colabdock)/app/colabdock
- [CoSiNE](https://proteiniq.io/app/cosine)/app/cosine
- [CpG Island Finder](https://proteiniq.io/app/cpg-island-finder)/app/cpg-island-finder
- [CSV to FASTA](https://proteiniq.io/app/csv-to-fasta)/app/csv-to-fasta

## D

- [DeepEMhancer](https://proteiniq.io/app/deepemhancer)/app/deepemhancer
- [DeepImmuno](https://proteiniq.io/app/deepimmuno)/app/deepimmuno
- [DeepRank-Ab](https://proteiniq.io/app/deeprank-ab)/app/deeprank-ab
- [DeepRank-GNN-esm](https://proteiniq.io/app/deeprank-gnn-esm)/app/deeprank-gnn-esm
- [DeepSP](https://proteiniq.io/app/deepsp)/app/deepsp
- [DeepViscosity](https://proteiniq.io/app/deepviscosity)/app/deepviscosity
- [DFMDock](https://proteiniq.io/app/dfmdock)/app/dfmdock
- [DiffAb](https://proteiniq.io/app/diffab)/app/diffab
- [DiffDock-L](https://proteiniq.io/app/diff-dock)/app/diff-dock
- [DiffDock-PP](https://proteiniq.io/app/diffdock-pp)/app/diffdock-pp
- [Dimorphite-DL](https://proteiniq.io/app/dimorphite-dl)/app/dimorphite-dl
- [DLKcat](https://proteiniq.io/app/dlkcat)/app/dlkcat
- [DNA ligation calculator](https://proteiniq.io/app/ligation-calculator)/app/ligation-calculator
- [DNA mutation generator](https://proteiniq.io/app/dna-mutator)/app/dna-mutator
- [DNA Shuffle](https://proteiniq.io/app/dna-shuffle)/app/dna-shuffle
- [DNA to Protein Converter](https://proteiniq.io/app/dna-to-protein)/app/dna-to-protein
- [DNA to RNA converter](https://proteiniq.io/app/dna-to-rna)/app/dna-to-rna
- [DNAGenIQ (Random DNA sequence generator)](https://proteiniq.io/app/random-dna)/app/random-dna
- [DockQ](https://proteiniq.io/app/dockq)/app/dockq
- [DR-BERT](https://proteiniq.io/app/dr-bert)/app/dr-bert
- [DSSP](https://proteiniq.io/app/dssp)/app/dssp
- [DynamicBind](https://proteiniq.io/app/dynamic-bind)/app/dynamic-bind

## E

- [EquiDock](https://proteiniq.io/app/equidock)/app/equidock
- [ESM-2](https://proteiniq.io/app/esm-2)/app/esm-2
- [ESM-C](https://proteiniq.io/app/esm-c)/app/esm-c
- [ESM-C Mutation Scoring](https://proteiniq.io/app/esm-c-mutation-scoring)/app/esm-c-mutation-scoring
- [ESM-IF1](https://proteiniq.io/app/esm-if1)/app/esm-if1
- [ESMFold](https://proteiniq.io/app/esmfold)/app/esmfold
- [ESMFold2](https://proteiniq.io/app/esmfold-2)/app/esmfold-2
- [ESMFold2 Binder Design](https://proteiniq.io/app/esmfold2-binder-design)/app/esmfold2-binder-design
- [eToxPred](https://proteiniq.io/app/etoxpred)/app/etoxpred
- [EvoDiff](https://proteiniq.io/app/evodiff)/app/evodiff
- [EvoIF](https://proteiniq.io/app/evoif)/app/evoif
- [EvoPro](https://proteiniq.io/app/evopro)/app/evopro
- [Extinction coefficient calculator](https://proteiniq.io/app/extinction-coefficient)/app/extinction-coefficient

## F

- [FASTA converter](https://proteiniq.io/app/fasta-converter)/app/fasta-converter
- [FASTA splitter](https://proteiniq.io/app/fasta-splitter)/app/fasta-splitter
- [FASTA to CSV converter](https://proteiniq.io/app/fasta-to-csv)/app/fasta-to-csv
- [FASTA to FASTQ Converter](https://proteiniq.io/app/fasta-to-fastq)/app/fasta-to-fastq
- [FASTQ to FASTA converter](https://proteiniq.io/app/fastq-to-fasta)/app/fastq-to-fasta
- [FastTree](https://proteiniq.io/app/fasttree)/app/fasttree
- [Filter DNA](https://proteiniq.io/app/filter-dna)/app/filter-dna
- [Filter protein](https://proteiniq.io/app/filter-protein)/app/filter-protein
- [FindPept](https://proteiniq.io/app/find-pept)/app/find-pept
- [FlowDock](https://proteiniq.io/app/flowdock)/app/flowdock
- [FoldSeek](https://proteiniq.io/app/foldseek)/app/foldseek
- [fpocket](https://proteiniq.io/app/fpocket)/app/fpocket
- [FreeBindCraft](https://proteiniq.io/app/freebindcraft)/app/freebindcraft

## G

- [GC content calculator](https://proteiniq.io/app/gc-content)/app/gc-content
- [GenBank Feature Extractor](https://proteiniq.io/app/genbank-feature-extractor)/app/genbank-feature-extractor
- [GenBank to FASTA Converter](https://proteiniq.io/app/genbank-to-fasta)/app/genbank-to-fasta
- [Genie 3](https://proteiniq.io/app/genie-3)/app/genie-3
- [GenMol](https://proteiniq.io/app/genmol)/app/genmol
- [GeoDock](https://proteiniq.io/app/geodock)/app/geodock
- [Glycosylation site finder](https://proteiniq.io/app/glycosylation-sites)/app/glycosylation-sites
- [gmx_MMPBSA](https://proteiniq.io/app/gmx-mmpbsa)/app/gmx-mmpbsa
- [GNINA](https://proteiniq.io/app/gnina)/app/gnina
- [GRAVY](https://proteiniq.io/app/gravy)/app/gravy
- [GROMACS](https://proteiniq.io/app/gromacs)/app/gromacs

## H

- [HighFold](https://proteiniq.io/app/highfold)/app/highfold
- [HMMER](https://proteiniq.io/app/hmmer)/app/hmmer
- [Humatch](https://proteiniq.io/app/humatch)/app/humatch
- [Hydropathy plot](https://proteiniq.io/app/hydropathy-plot)/app/hydropathy-plot
- [Hydrophobicity plot](https://proteiniq.io/app/hydrophobicity-plot)/app/hydrophobicity-plot
- [HyperMPNN](https://proteiniq.io/app/hypermpnn)/app/hypermpnn

## I

- [IgBLAST](https://proteiniq.io/app/igblast)/app/igblast
- [IgDesign](https://proteiniq.io/app/igdesign)/app/igdesign
- [IgGM](https://proteiniq.io/app/iggm)/app/iggm
- [ImmuneBuilder](https://proteiniq.io/app/immunebuilder)/app/immunebuilder
- [InChI to SMILES](https://proteiniq.io/app/inchi-to-smiles)/app/inchi-to-smiles
- [Instability Index](https://proteiniq.io/app/instability-index)/app/instability-index
- [IntelliFold 2](https://proteiniq.io/app/intellifold-2)/app/intellifold-2
- [IPC 2.0 (isoelectric point calculator)](https://proteiniq.io/app/isoelectric-point-calculator)/app/isoelectric-point-calculator
- [IPSAE](https://proteiniq.io/app/ipsae)/app/ipsae
- [IQ-TREE](https://proteiniq.io/app/iq-tree)/app/iq-tree

## L

- [Lead-likeness filter](https://proteiniq.io/app/lead-likeness-filter)/app/lead-likeness-filter
- [Ligand fixer](https://proteiniq.io/app/ligand-fixer)/app/ligand-fixer
- [LigandMPNN](https://proteiniq.io/app/ligand-mpnn)/app/ligand-mpnn
- [LightDock](https://proteiniq.io/app/lightdock)/app/lightdock
- [Lipinski's rule of 5](https://proteiniq.io/app/lipinskis-rule-of-5)/app/lipinskis-rule-of-5
- [LMI4Boltz](https://proteiniq.io/app/lmi4boltz)/app/lmi4boltz
- [LocScale](https://proteiniq.io/app/locscale)/app/locscale

## M

- [MAFFT](https://proteiniq.io/app/mafft)/app/mafft
- [mBER](https://proteiniq.io/app/mber)/app/mber
- [MD Trajectory Analysis](https://proteiniq.io/app/md-trajectory-analysis)/app/md-trajectory-analysis
- [MDGen](https://proteiniq.io/app/mdgen)/app/mdgen
- [MiniFold](https://proteiniq.io/app/minifold)/app/minifold
- [MMseqs2](https://proteiniq.io/app/mmseqs2)/app/mmseqs2
- [MOL to SMILES](https://proteiniq.io/app/mol-to-smiles)/app/mol-to-smiles
- [MOL2 to SMILES](https://proteiniq.io/app/mol2-to-smiles)/app/mol2-to-smiles
- [Molecular descriptors](https://proteiniq.io/app/molecular-descriptors)/app/molecular-descriptors
- [Molecular similarity search](https://proteiniq.io/app/molecular-similarity-search)/app/molecular-similarity-search
- [MolProbity](https://proteiniq.io/app/molprobity)/app/molprobity
- [MUMmer4](https://proteiniq.io/app/mummer4)/app/mummer4
- [MUSCLE5](https://proteiniq.io/app/muscle5)/app/muscle5

## N

- [NetSolP-1.0](https://proteiniq.io/app/netsolp-1-0)/app/netsolp-1-0
- [NuCaliby](https://proteiniq.io/app/nucaliby)/app/nucaliby

## O

- [ODesign](https://proteiniq.io/app/odesign)/app/odesign
- [Oligo analyzer](https://proteiniq.io/app/oligo-analyzer)/app/oligo-analyzer
- [One-to-three converter](https://proteiniq.io/app/one-to-three)/app/one-to-three
- [Open Babel](https://proteiniq.io/app/open-babel)/app/open-babel
- [OpenDDE](https://proteiniq.io/app/opendde)/app/opendde
- [OpenFE](https://proteiniq.io/app/openfe)/app/openfe
- [OpenFold3](https://proteiniq.io/app/openfold-3)/app/openfold-3
- [OpenMM](https://proteiniq.io/app/openmm)/app/openmm
- [ORB v3](https://proteiniq.io/app/orb-v3)/app/orb-v3
- [ORF Finder](https://proteiniq.io/app/orf-finder)/app/orf-finder
- [Overlapping peptide generator](https://proteiniq.io/app/overlapping-peptide-generator)/app/overlapping-peptide-generator

## P

- [PAINS filter](https://proteiniq.io/app/pains-filter)/app/pains-filter
- [PandaDock](https://proteiniq.io/app/pandadock)/app/pandadock
- [ParaSurf](https://proteiniq.io/app/parasurf)/app/parasurf
- [PDB Download](https://proteiniq.io/app/pdb-download)/app/pdb-download
- [PDB to CIF Converter](https://proteiniq.io/app/pdb-to-cif)/app/pdb-to-cif
- [PDB to FASTA converter](https://proteiniq.io/app/pdb-to-fasta)/app/pdb-to-fasta
- [PDB to MOL2 Converter](https://proteiniq.io/app/pdb-to-mol2)/app/pdb-to-mol2
- [PDB to SDF](https://proteiniq.io/app/pdb-to-sdf)/app/pdb-to-sdf
- [PDB2PQR](https://proteiniq.io/app/pdb2pqr)/app/pdb2pqr
- [PDBFixer](https://proteiniq.io/app/pdb-fixer)/app/pdb-fixer
- [PDBQT to SDF](https://proteiniq.io/app/pdbqt-to-sdf)/app/pdbqt-to-sdf
- [PDBsum](https://proteiniq.io/app/pdbsum)/app/pdbsum
- [PepINVENT](https://proteiniq.io/app/pepinvent)/app/pepinvent
- [PepMimic](https://proteiniq.io/app/pep-mimic)/app/pep-mimic
- [PepMLM](https://proteiniq.io/app/pepmlm)/app/pepmlm
- [Peptide cutter](https://proteiniq.io/app/peptide-cutter)/app/peptide-cutter
- [Peptide mass calculator](https://proteiniq.io/app/peptide-mass)/app/peptide-mass
- [PeptideBuilder](https://proteiniq.io/app/peptidebuilder)/app/peptidebuilder
- [pI Calculator](https://proteiniq.io/app/pi-calculator)/app/pi-calculator
- [PLACER](https://proteiniq.io/app/placer)/app/placer
- [PLIP](https://proteiniq.io/app/plip)/app/plip
- [PocketFlow](https://proteiniq.io/app/pocketflow)/app/pocketflow
- [PocketXMol](https://proteiniq.io/app/pocketxmol)/app/pocketxmol
- [PolyXpert](https://proteiniq.io/app/polyxpert)/app/polyxpert
- [PoseBusters](https://proteiniq.io/app/posebusters)/app/posebusters
- [PPAP](https://proteiniq.io/app/ppap)/app/ppap
- [Primer3](https://proteiniq.io/app/primer3)/app/primer3
- [PRODIGY](https://proteiniq.io/app/prodigy)/app/prodigy
- [ProFam](https://proteiniq.io/app/profam)/app/profam
- [ProGen2](https://proteiniq.io/app/progen)/app/progen
- [ProLIF](https://proteiniq.io/app/prolif)/app/prolif
- [PROPKA 3](https://proteiniq.io/app/propka)/app/propka
- [ProstT5](https://proteiniq.io/app/prostt5)/app/prostt5
- [Protein charge plot](https://proteiniq.io/app/charge-plot)/app/charge-plot
- [Protein molecular weight calculator](https://proteiniq.io/app/molecular-weight)/app/molecular-weight
- [Protein motif scanner](https://proteiniq.io/app/motif-scanner)/app/motif-scanner
- [Protein parameters](https://proteiniq.io/app/protein-parameters)/app/protein-parameters
- [Protein scale profiler](https://proteiniq.io/app/protein-scale)/app/protein-scale
- [Protein stability prediction](https://proteiniq.io/app/protein-stability)/app/protein-stability
- [Protein to DNA converter](https://proteiniq.io/app/protein-to-dna)/app/protein-to-dna
- [Protein-Sol](https://proteiniq.io/app/protein-sol)/app/protein-sol
- [Proteina-Complexa](https://proteiniq.io/app/proteina-complexa)/app/proteina-complexa
- [ProteinMPNN](https://proteiniq.io/app/protein-mpnn)/app/protein-mpnn
- [Protenix](https://proteiniq.io/app/protenix)/app/protenix
- [Proteo-R1](https://proteiniq.io/app/proteo-r1)/app/proteo-r1
- [ProteusAI](https://proteiniq.io/app/proteusai)/app/proteusai
- [ProtGenIQ (Random protein sequence generator)](https://proteiniq.io/app/random-protein)/app/random-protein
- [PubChem Download](https://proteiniq.io/app/pubchem-download)/app/pubchem-download
- [pyRMSD](https://proteiniq.io/app/pyrmsd)/app/pyrmsd
- [pySCA](https://proteiniq.io/app/pysca)/app/pysca

## Q

- [QEPPI](https://proteiniq.io/app/qeppi)/app/qeppi

## R

- [Radius of gyration](https://proteiniq.io/app/radius-of-gyration)/app/radius-of-gyration
- [Ramachandran plot](https://proteiniq.io/app/ramachandran-plot)/app/ramachandran-plot
- [RAPiDock](https://proteiniq.io/app/rapidock)/app/rapidock
- [RaSP](https://proteiniq.io/app/rasp)/app/rasp
- [RAxML-NG](https://proteiniq.io/app/raxml-ng)/app/raxml-ng
- [Reverse complement generator](https://proteiniq.io/app/reverse-complement)/app/reverse-complement
- [RFantibody](https://proteiniq.io/app/rfantibody)/app/rfantibody
- [RFD4-Proteina](https://proteiniq.io/app/rfd4-proteina)/app/rfd4-proteina
- [RFdiffusion](https://proteiniq.io/app/rfdiffusion)/app/rfdiffusion
- [RFdiffusion 2](https://proteiniq.io/app/rfdiffusion-2)/app/rfdiffusion-2
- [RFdiffusion3](https://proteiniq.io/app/rfdiffusion3)/app/rfdiffusion3
- [RFOptimization](https://proteiniq.io/app/rfoptimization)/app/rfoptimization
- [Rhea Download](https://proteiniq.io/app/rhea-download)/app/rhea-download
- [RMSD calculator](https://proteiniq.io/app/rmsd-calculator)/app/rmsd-calculator
- [RNA to DNA converter](https://proteiniq.io/app/rna-to-dna)/app/rna-to-dna
- [RNAalifold](https://proteiniq.io/app/rnaalifold)/app/rnaalifold
- [RNAcofold](https://proteiniq.io/app/rnacofold)/app/rnacofold
- [RNAdistance](https://proteiniq.io/app/rnadistance)/app/rnadistance
- [RNAdos](https://proteiniq.io/app/rnados)/app/rnados
- [RNAduplex](https://proteiniq.io/app/rnaduplex)/app/rnaduplex
- [RNAeval](https://proteiniq.io/app/rnaeval)/app/rnaeval
- [RNAfold](https://proteiniq.io/app/rnafold)/app/rnafold
- [RNAGenIQ (Random RNA sequence generator)](https://proteiniq.io/app/random-rna)/app/random-rna
- [RNAinverse](https://proteiniq.io/app/rnainverse)/app/rnainverse
- [RNALfold](https://proteiniq.io/app/rnalfold)/app/rnalfold
- [RNAplex](https://proteiniq.io/app/rnaplex)/app/rnaplex
- [RNAplfold](https://proteiniq.io/app/rnaplfold)/app/rnaplfold
- [RNAplot](https://proteiniq.io/app/rnaplot)/app/rnaplot
- [RNAsubopt](https://proteiniq.io/app/rnasubopt)/app/rnasubopt
- [RNAup](https://proteiniq.io/app/rnaup)/app/rnaup
- [RosettaFold3](https://proteiniq.io/app/rosettafold3)/app/rosettafold3

## S

- [Salmon](https://proteiniq.io/app/salmon)/app/salmon
- [SASA calculator](https://proteiniq.io/app/sasa-calculator)/app/sasa-calculator
- [ScanNet](https://proteiniq.io/app/scannet)/app/scannet
- [SDF to PDB Converter](https://proteiniq.io/app/sdf-to-pdb)/app/sdf-to-pdb
- [SDF to PDBQT](https://proteiniq.io/app/sdf-to-pdbqt)/app/sdf-to-pdbqt
- [SDF to SMILES](https://proteiniq.io/app/sdf-to-smiles)/app/sdf-to-smiles
- [SigmaDock](https://proteiniq.io/app/sigmadock)/app/sigmadock
- [SMILES to InChI](https://proteiniq.io/app/smiles-to-inchi)/app/smiles-to-inchi
- [SMILES to MOL2](https://proteiniq.io/app/smiles-to-mol2)/app/smiles-to-mol2
- [SMILES to PDB](https://proteiniq.io/app/smiles-to-pdb)/app/smiles-to-pdb
- [SMILES to PDBQT](https://proteiniq.io/app/smiles-to-pdbqt)/app/smiles-to-pdbqt
- [SMILES to SDF](https://proteiniq.io/app/smiles-to-sdf)/app/smiles-to-sdf
- [SMINA](https://proteiniq.io/app/smina)/app/smina
- [SMRTnet](https://proteiniq.io/app/smrtnet)/app/smrtnet
- [SolubleMPNN](https://proteiniq.io/app/soluble-mpnn)/app/soluble-mpnn
- [SPRINT](https://proteiniq.io/app/sprint)/app/sprint
- [StaB-ddG](https://proteiniq.io/app/stab-ddg)/app/stab-ddg
- [Stereoisomer generator](https://proteiniq.io/app/stereoisomer-generator)/app/stereoisomer-generator
- [StringZilla v5](https://proteiniq.io/app/stringzilla)/app/stringzilla
- [Structural alert screening](https://proteiniq.io/app/toxicity-prediction)/app/toxicity-prediction
- [SuperWater](https://proteiniq.io/app/superwater)/app/superwater
- [SurfDock](https://proteiniq.io/app/surfdock)/app/surfdock

## T

- [TAP2](https://proteiniq.io/app/tap2)/app/tap2
- [TEMPL Pipeline](https://proteiniq.io/app/templ-pipeline)/app/templ-pipeline
- [ThermoMPNN](https://proteiniq.io/app/thermompnn)/app/thermompnn
- [Three-to-one converter](https://proteiniq.io/app/three-to-one)/app/three-to-one
- [TLimmuno2](https://proteiniq.io/app/tlimmuno2)/app/tlimmuno2
- [TNP](https://proteiniq.io/app/tnp)/app/tnp
- [TXT to FASTA converter](https://proteiniq.io/app/txt-to-fasta)/app/txt-to-fasta

## U

- [UniProt Download](https://proteiniq.io/app/uniprot-download)/app/uniprot-download
- [USAlign](https://proteiniq.io/app/usalign)/app/usalign

## V

- [Veber's rule](https://proteiniq.io/app/vebers-rule)/app/vebers-rule
- [ViennaRNA](https://proteiniq.io/app/viennarna)/app/viennarna