MD Trajectory Analysis Online - RMSD, RMSF, Rg Calculator

Analyses to run

RMSD

RMSF

Radius of gyration

End-to-end distance

Shape parameters (asphericity)

Moment of inertia

Hydrogen bonds

Salt bridges

Contact analysis

Distance tracking

H-bond lifetime

PCA - Principal motions

Conformational clustering

MSD - Diffusion

Dynamic cross-correlation

Persistence length

Secondary structure (DSSP)

Ramachandran plot

Chi angles (side chain dihedrals)

Helix geometry

SASA

RDF

Density profiles

Water dynamics (residence time)

Atom selection

Reference frame

MD Trajectory Analysis