Use cases
Runnable workflows for specific research goals and methods.
A
B
C
D
E
F
G
H
I
L
M
- Maximum likelihood phylogenetics/use-cases/maximum-likelihood-phylogenetics
- Molecular docking/use-cases/molecular-docking
- Molecular dynamics simulation/use-cases/molecular-dynamics-simulation
- Multiple protein structure alignment/use-cases/multiple-protein-structure-alignment
- Multiple sequence alignment/use-cases/multiple-sequence-alignment
P
- Pairwise sequence alignment/use-cases/pairwise-sequence-alignment
- Peptide design/use-cases/peptide-design
- Peptide structure prediction/use-cases/peptide-structure-prediction
- Peptide–protein docking/use-cases/peptide-protein-docking
- Pharmacophore-based virtual screening/use-cases/pharmacophore-based-virtual-screening
- Phylogenetic analysis/use-cases/phylogenetic-analysis
- Protein binder design/use-cases/protein-binder-design
- Protein complex structure prediction/use-cases/protein-complex-structure-prediction
- Protein design/use-cases/protein-design
- Protein fold recognition/use-cases/protein-fold-recognition
- Protein molecular dynamics simulation/use-cases/protein-molecular-dynamics-simulation
- Protein secondary structure prediction/use-cases/protein-secondary-structure-prediction
- Protein sequence alignment/use-cases/protein-sequence-alignment
- Protein sequence design/use-cases/protein-sequence-design
- Protein structure alignment/use-cases/protein-structure-alignment
- Protein structure prediction/use-cases/protein-structure-prediction
- Protein structure search/use-cases/protein-structure-search
- Protein–ligand docking/use-cases/protein-ligand-docking
- Protein–protein docking/use-cases/protein-protein-docking
R
- Replica exchange molecular dynamics/use-cases/replica-exchange-molecular-dynamics
- RNA 3D structure prediction/use-cases/rna-3d-structure-prediction
- RNA secondary structure prediction/use-cases/rna-secondary-structure-prediction
- RNA structure prediction/use-cases/rna-structure-prediction
- RNA–RNA interaction prediction/use-cases/rna-rna-interaction-prediction
S
- Sequence alignment/use-cases/sequence-alignment
- Shape-based virtual screening/use-cases/shape-based-virtual-screening
- Single-sequence protein structure prediction/use-cases/single-sequence-protein-structure-prediction
- Steered molecular dynamics/use-cases/steered-molecular-dynamics
- Structure-based sequence alignment/use-cases/structure-based-sequence-alignment
- Structure-based virtual screening/use-cases/structure-based-virtual-screening