Protein
IQ
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Protein
IQ
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Tool
AlphaFold2
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Template
CSV / Excel
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Protein
Files
FASTA
Protein
Template
Initial guess
MSA
Prediction parameters
Multiple input files
Chains of one complex
Number of recycles
Early stop tolerance
Number of models
Random seeds
Ensemble runs
Model type
Auto (recommended)
Enable dropout
MSA options
MSA mode
UniRef+Environmental (2x credits)
Max MSA sequences
Max extra MSA sequences
Max MSA pair
Use templates
Advanced options
AMBER relaxation
Save recycle intermediates
Pair mode (multimer)
Unpaired+Paired (default)
Pairing strategy (multimer)
Greedy (default)
Ranking metric
Auto (default)
Model order
Stop at score
Extra pTM metrics
Random seed
Use MSA cluster profiles
Save raw prediction data
Save single representations
Save pair representations
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