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New batch
Batch mode is new and currently available for a select few tools. We’ll expand support to all tools over the next few days.
Batch setup
Tool
AutoDock Vina
Name
Project
Inputs
Receptor
Upload files
or drag and drop
Ligand
Files
SMILES
Upload files
or drag and drop
Settings
Scoring function
Vina (default)
Exhaustiveness
Number of poses
Binding pocket
Pocket definition
Automatic
Bound ligand residues
Pocket padding (A)
Whole-protein padding (A)
Receptor preparation
Receptor preparation method
Automatic
Remove detected ligand-like chains
Advanced settings
Docking operation
Dock
Flexible residues
Random seed
Hydrated ligand workflow
Zinc metalloprotein mode
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