Tools Overview

ProteinIQ provides a comprehensive suite of bioinformatics tools organized into several categories. All tools run entirely in your browser for maximum privacy and speed.

Tool Categories

Sequence Converters

Tools for converting between different sequence formats:

• FASTQ to FASTA: Convert sequencing data to sequence format
• GenBank to FASTA: Extract sequences from GenBank records
• PDB to FASTA: Extract protein sequences from structure files

Protein Analysis Tools

Calculate various properties of protein sequences:

• Molecular Weight Calculator: Determine protein molecular weight
• Isoelectric Point (pI): Calculate protein isoelectric point
• Instability Index: Assess protein stability
• GRAVY Score: Grand average of hydropathy
• Aliphatic Index: Measure of thermostability
• Extinction Coefficient: Protein concentration determination

Structure Tools

Work with protein structure files:

• PDB Download: Direct download from RCSB Protein Data Bank
• PDB to SDF: Convert structure formats
• PDB to MOL2: Structure format conversion

Sequence Generators

Create random sequences for testing and analysis:

• Random Protein Generator: Generate random protein sequences
• Random DNA Generator: Create random DNA sequences

Utility Tools

Additional helpful tools:

• Reverse Complement: Calculate DNA reverse complement
• Amino Acid Code Converter: Convert between 1-letter and 3-letter codes
• DNA to Protein Translation: Translate DNA sequences to proteins

Using the Tools

Each tool follows a consistent interface pattern:

1. Input Section: Paste sequences or upload files
2. Parameters: Adjust tool-specific settings
3. Results: View calculated results and analysis
4. Export: Download results in various formats

Tool Features

Privacy-First Design

• All processing happens in your browser
• No data is sent to external servers
• Your sequences remain completely private

Instant Results

• No waiting for server processing
• Results appear immediately after calculation
• No upload or download delays

Flexible Input

• Support for multiple file formats
• Paste sequences directly
• Batch processing capabilities

Professional Output

• Publication-ready results
• Multiple export formats
• Detailed analysis reports

Getting Started

1. Browse tools by category or use the search function
2. Click on any tool to access its dedicated page
3. Review the tool-specific documentation
4. Try the provided examples to familiarize yourself

Need Help?

Each tool page includes:

• Detailed usage instructions
• Parameter explanations
• Example inputs and outputs
• Best practices and tips

For additional support, refer to our User Guides or contact our support team.