# ProteinIQ

> Bioinformatics tools and workflows for protein, DNA, RNA, ligand, and structure analysis.

ProteinIQ.io lets researchers design, fold, dock, simulate, and analyze proteins and DNA in the browser, through the ProteinIQ REST API, with the Python SDK, or through the remote MCP server. Analyses use documented inputs and settings, create tracked jobs, and return structured results plus downloadable scientific files.

## Bioinformatics tools

ProteinIQ includes tools for folding, protein and ligand design, molecular docking, molecular dynamics, alignment, screening, sequence analysis, and file conversion. Browse the [documented tool catalog](https://proteiniq.io/app/tools) to choose a method and inspect its accepted input, settings, limits, outputs, and citations.

## Workflows

Workflows connect compatible tools into repeatable multi-step analyses. Researchers can review the graph, input routing, settings, and estimated credit use before starting a run.

## Developer access

Use the [ProteinIQ API documentation](https://proteiniq.io/docs/api) for direct HTTP integration, the [OpenAPI contract](https://proteiniq.io/openapi.json) for machine-readable request and response schemas, the [Python SDK](https://proteiniq.io/docs/api/python-sdk) for Python applications, or the [MCP setup guide](https://proteiniq.io/docs/api/mcp) for agent access.

## Results and guidance

Completed jobs retain meaningful structured outputs and downloadable files such as structures, ranked poses, scores, alignments, tables, and reports. The browser workspace supports interactive review, while API and MCP clients can retrieve the same authorized job and result records programmatically.

For a curated agent index, read [llms.txt](https://proteiniq.io/llms.txt). For complete public discovery, use the [sitemap index](https://proteiniq.io/sitemap-index.xml).